Software

We develop software for image processing, curation, quality assurance, and analysis.  All software relies upon an open development model and "glass box" design.  Together, these tools help accelerate reproducible neuroscience at scale.

QSIPrep

QSIPrep

QSIPrep is a complete BIDS-app for processing diffusion-weighted MRI (dMRI) data. QSIPrep is compatible with nearly any acquisition scheme, and provides both top-performing pre-processing and reconstruction methods.

QSIPrep

downloaded

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10k+

as of

4/26/22

QSIPrep
QSIPrep
XCP Engine

XCP Engine

XCP Engine provides post-processing for fMRI data that has been processed using fMRIPrep. Features include quality assurance, confound regression, and many derived measures including networks at multiple scales.

XCP Engine

downloaded

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6.7k

as of

4/26/22

XCP Engine
XCP Engine
ASLPrep

ASLPrep

ASLPrep is a suite of software pipelines that ensure the reproducible and generalizable processing of ASL MRI data and quantification of brain perfusion.

ASLPrep

downloaded

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1.2k

as of

4/26/22

ASLPrep
ASLPrep
Flywheel Tools

Flywheel Tools

A full-featured suite of tools for curating and organizing data in the Flywheel imaging database.

Flywheel Tools

downloaded

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46

as of

4/26/22

Flywheel Tools
Flywheel Tools
MSNR

MSNR

Multi Scale Network Regression is an R based tool to extract multivariate brain-phenotype relationships.

MSNR

downloaded

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1

as of

4/26/22

MSNR
MSNR
CuBIDS

CuBIDS

Curation of BIDS" (CuBIDS) is a sanity preserving workflow and software package that aids users in curating (checking and fixing) large, heterogeneous BIDS datasets. CuBIDS also functions as a BIDS dataset heterogeneity parser, complete with a number of customizable features.

CuBIDS

downloaded

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1

as of

4/26/22

CuBIDS
CuBIDS