Software

We develop software for image processing, curation, quality assurance, and analysis.  All software relies upon an open development model and "glass box" design.  Together, these tools help accelerate reproducible neuroscience at scale.

QSIPrep

QSIPrep is a complete BIDS-app for processing diffusion-weighted MRI (dMRI) data. QSIPrep is compatible with nearly any acquisition scheme, and provides both top-performing pre-processing and reconstruction methods.

QSIPrep

10k+

QSIPrep
QSIPrep
QSIPrep

# downloaded

10k+

as of 

8/3/22

XCP Engine

XCP Engine provides post-processing for fMRI data that has been processed using fMRIPrep. Features include quality assurance, confound regression, and many derived measures including networks at multiple scales.

XCP Engine

6.8k

XCP Engine
XCP Engine
XCP Engine

# downloaded

6.8k

as of 

8/3/22

ASLPrep

ASLPrep is a suite of software pipelines that ensure the reproducible and generalizable processing of ASL MRI data and quantification of brain perfusion.

ASLPrep

1.4k

ASLPrep
ASLPrep
ASLPrep

# downloaded

1.4k

as of 

8/3/22

Flywheel Tools

A full-featured suite of tools for curating and organizing data in the Flywheel imaging database.

Flywheel Tools

47

Flywheel Tools
Flywheel Tools
Flywheel Tools

# downloaded

47

as of 

8/3/22

MSNR

Multi Scale Network Regression is an R based tool to extract multivariate brain-phenotype relationships.

MSNR

1

MSNR
MSNR
MSNR

# downloaded

1

as of 

8/3/22

CuBIDS

Curation of BIDS" (CuBIDS) is a sanity preserving workflow and software package that aids users in curating (checking and fixing) large, heterogeneous BIDS datasets. CuBIDS also functions as a BIDS dataset heterogeneity parser, complete with a number of customizable features.

CuBIDS

1

CuBIDS
CuBIDS
CuBIDS

# downloaded

1

as of 

8/3/22