Research
Research
Research
Research
Software
We develop software for image processing, curation, quality assurance, and analysis. All software relies upon an open development model and "glass box" design. Together, these tools help accelerate reproducible neuroscience at scale.
QSIPrep is a complete BIDS-app for processing diffusion-weighted MRI (dMRI) data. QSIPrep is compatible with nearly any acquisition scheme, and provides both top-performing pre-processing and reconstruction methods.
QSIPrep
10k+
# downloaded
10k+
as of
10/1/23
XCP-D provides post-processing for fMRI data that has been processed using fMRIPrep or HCP pipelines. Features include quality assurance, confound regression, and many derived measures including networks at multiple scales.
XCP-D
10k+
# downloaded
10k+
as of
10/1/23
Curation of BIDS" (CuBIDS) is a sanity preserving workflow and software package that aids users in curating (checking and fixing) large, heterogeneous BIDS datasets. CuBIDS also functions as a BIDS dataset heterogeneity parser, complete with a number of customizable features.
CuBIDS
4k+
# downloaded
4k+
as of
10/1/23
ASLPrep is a suite of software pipelines that ensure the reproducible and generalizable processing of ASL MRI data and quantification of brain perfusion.
ASLPrep
2.5k+
# downloaded
2.5k+
as of
10/1/23
ModelArray is an R package for memory-efficient statistical analysis of high-dimensional imaging features including fixels, voxels, and beyond.
ModelArray
750+
# downloaded
750+
as of
10/1/23
A full-featured suite of tools for curating and organizing data in the Flywheel imaging database.
Flywheel Tools
50+
# downloaded
50+
as of
10/1/23
Multi Scale Network Regression is an R based tool to extract multivariate brain-phenotype relationships.
MSNR
10+
# downloaded
10+
as of
10/1/23